Showing : Alternative splicing • reset
5
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Read counts generated by SGSeq are always 0
sgseq splicing alternative splicing
updated 8.2 years ago by ▴ 200 • written 8.2 years ago by ▴ 20
0
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5
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2.2k
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DEXSeq - Error in estimateSizeFactorsForMatrix(featureCounts(object)
DEXSeq DESeq2 dexseq deseq2 alternative splicing
8.6 years ago Fahmi Nazarie • 0
0
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1
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1.9k
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DEXSeq with multiple conditions
dexseq alternative splicing exon skipping
updated 9.2 years ago by ★ 3.7k • written 9.2 years ago by • 0
0
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6
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1.5k
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Which sequencing parameters are required for SGSeq analysis of splice events?
rna-seq alternative splicing SGSeq
5.5 years ago andrea.bast • 0
0
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3
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1.3k
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differential splicing events and covariates
limma rna-seq alternative splicing
updated 6.6 years ago by 50k • written 6.6 years ago by ▴ 80
0
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2
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1.2k
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Getting error in running maser 0.99.16
maser R rMATs alternative splicing
5.7 years ago Reza • 0
1
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0
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1.2k
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visualizing top differentially spliced genes
limma voom alternative splicing
8.2 years ago osa.zuta ▴ 40
0
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1
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1.1k
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estimateDispersions fails even with fitType local
deseq2 dexseq alternative splicing
updated 8.4 years ago by 42k • written 8.5 years ago by • 0
3
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2
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1.0k
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ASpli readCounts never ends!
aspli readCounts rna-seq alternative splicing AS
5.2 years ago fernandalpcosta ▴ 10
0
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0
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950
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ASpli Package: Problem with readCounts() function, no Junctions analysed.
rnaseq alternative splicing ASpli
5.5 years ago nicolas.guyon2 • 0
0
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0
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ASpli AsDiscover error
R alternative splicing ASpli AsDiscover
5.4 years ago abdul rawoof ▴ 60
3
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3
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888
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Custom gene annotations for SGSeq
sgseq alternative splicing rna seq
updated 4.5 years ago by ▴ 200 • written 4.5 years ago by • 0
0
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2
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783
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using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq SGSeq Alternative splicing
updated 4.6 years ago by ▴ 200 • written 4.6 years ago by • 0
0
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0
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692
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Psichomics Suppa Input issue
psichomics SUPPA Splicing Alternative Splicing Retained Introns
3.6 years ago noahhelton98 ▴ 20
14 results • Page 1 of 1
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Replies
Answer: Differential gene expression analysis results by ATpoint ★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results by sajadahmad41454 • 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results by swbarnes2 ★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Dylan.Sheerin • 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Gordon Smyth 50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
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